PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s713921g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HSF
Protein Properties Length: 439aa    MW: 49779.1 Da    PI: 9.3889
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s713921g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.31e-321859102
                        HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXX CS
       HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrk 100
                        +++d+++++++sws+ +nsfvv+d+++fa+++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++ikr+
  PDK_30s713921g001   1 MVDDPSTDRVVSWSRGNNSFVVWDPHTFATSLLPRYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEGFLRGQKHLLKTIKRR 83 
                        899*******************************************************999.........*********************9 PP

                        XX CS
       HSF_DNA-bind 101 ks 102
                        k 
  PDK_30s713921g001  84 KP 85 
                        85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-34183IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-49183IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.13E-31183IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.7E-29183IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-103244IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403357IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-104557IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF097421.3E-6260414No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MVDDPSTDRV VSWSRGNNSF VVWDPHTFAT SLLPRYFKHN NFSSFVRQLN TYGFRKVDPD  60
KWEFANEGFL RGQKHLLKTI KRRKPPSHPP SQQQTLGQYL EVGRFGLEGE INRLKRDKQL  120
LMAEVVKLRQ VQQNTKAHLK AMEERIQGTE QKQQRMMAFL ARVIQNPNYL QQLVNENERQ  180
KELEEAISKK RRRPIDRAPE NDDVGTSGNQ KLEMPMKIEV LESLQDLNQD DVSDLESMAK  240
EIQGVGRGKI ESLKDLVTLS VWAQNNYQTR HLAKILIHLV WCLQDSMSIS AGSPAVYRKA  300
VNAAYISSVF LKFMIENAKS DKFEELCLDL AKDEKGKHDL PIEQSVEAFV MRGMLSFIGA  360
SDLCSGPSPG PKDVHPCIDA AMLQDSAVVA SVVRRLLLNF INRPRIPFNG SSYPIISEGS  420
QPGVLQRVGS AAGMMIPYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-2218336129Heat shock factor protein 1
5d5v_B1e-2218336129Heat shock factor protein 1
5d5v_D1e-2218336129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17682LKTIKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008813499.11e-179PREDICTED: heat stress transcription factor A-2b-like
SwissprotQ6VBB21e-118HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLA0A0D9WW521e-118A0A0D9WW52_9ORYZ; Uncharacterized protein
STRINGORGLA07G0042500.11e-116(Oryza glaberrima)
STRINGLOC_Os07g08140.11e-116(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.15e-91heat shock transcription factor A6B